Change proxy settings only for Chrome

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Disable proxy setting
Add command line parameter --no-proxy-server= to the command. (In windows, add this to the target path in the shortcut properties)

Specify different proxy
Add command line parameter --proxy-server="127.0.0.1:8080" to the command

Specify no proxy server list
Add command line parameter like this --proxy-bypass-list="127.0.0.1;localhost"